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Publications

2026

  • Aura Moreno-Vega*, Macarena Zambrano*, Lilia Estrada-Virrueta*, Julia Puig*, Xiangyu Meng, Helene Neyret-Kahn, Mingjun Shi, Florent Dufour, Guerric Gilbert, Ke Li, Clarice Groeneveld, Jacqueline Fontugne, Mercedes Pérez-Escavy, Wajdi Dhifli, Clément Hua, Luc Cabel, Clémentine Krucker, Laura Tanguy, Sia Viborg Lindskrog, Claire Beraud, Yanina V. Langle, Tao Ye, Fariza Tahi, Irwin Davidson, Jesus M Paramio, Lars Dyrskjot, Yves Allory, Philippe LLUEL, Ana Eiján, Catalina Lodillinsky#, Mohamed Elati#, François Radvanyi#, Isabelle Bernard-Pierrot#. FGFR3-driven gene regulatory network analysis reveals a pro-tumoral role for p63 in luminal bladder tumors, The Journal of Clinical Investigation, accepted
  • G. Marcq, K. Geles, W. Dhifli, P. Eriksson, C. Bernardo, C. Guenes, I. Bernard-Pierrot, G. Sjödahl, Y. Allory, F. Radvanyi, M. Elati, A universal molecular map of bladder cancer: from cell lines in vitro to tumors and back using co-regulatory networks, European Urology, Volume 89, Supplement 1, 2026
  • Manaa, N., Karabadji, N. E., Seridi, H., Mendjel, M. S. M., & Dhifli, W. (2026). Improved VAE-GAN via mixture of Gaussians applied to brain tumor MRI classification. Knowledge-Based Systems, 116198.
  • Guinhouya, B. C., Morgenroth, T., Boudis, F., Apété, G. K., Dossou, G. T., Gasso, G., & Zitouni, D. (2026). Impracticality of banning collection of data on ethnicity and race in artificial intelligence-enabled health care in France. The Lancet Digital Health, 101005.
  • Liu, J., Jiang, W., Wang, X., Azoitei, A., Liu, H., Najjar, G., Liu, K, Melzer, M-K, Stilgenbauer, S. Elati, M. ... & Günes, C. (2026). CRISPR and Compound Screens in a Novel Ex Vivo Tissue Model Identify DDR1 and ETA as Regulators of Cancer Cell Invasion. Cellular & Molecular Biology Letters, 
  • Hongyan Xu, Nour Elislem Karabadji, Jun Xu, Ali Assi, Abdelghani Lakhdari, Mohamed Elati, Wajdi Dhifli, Multi-group overlapping weighted random forests, Information & Communications Technology Express, 2026, ,ISSN 2405-9595.
  • Karabadji, N. E., Assi, A., Korba, A. A., Al Nuaim, A. A., Seridi, H., Elati, M., & Dhifli, W. (2026). Towards Better Random Forests with Tree Weighting, Accuracy and Diversity-Preserving Pruning. Expert Systems with Applications, 131256.
  • Ali Assi, Nour Elislem Karabadji, Mohamed Elati and Wajdi Dhifli, Reasoning vs. Critic-Based Verification for Biomedical Relation Extraction with Large Language Models. CEUR-WS Proceedings of WWW conference 2026.

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2025

  • Bernhard, C., Geles, K., Pawlak, G., Dhifli, W., Dispot, A., Dusol, J., ... & Elati, M. (2025). A coregulatory influence map of glioblastoma heterogeneity and plasticity. npj Precision Oncology, 9(1), 110.
  • Truong, M.J., Pawlak, G., Meneboo, J.P., Sebda, S., Fernandes, M., Figeac, M., Elati, M. and Tulasne, D., 2025. Comprehensive map of the regulatory network triggered by MET exon 14 skipping reveals important involvement of the RAS-ERK signaling pathway. Cell Death & Disease, 16(1), p.783.
  • Assi, A., Karabadji, N. E., Elati, M., & Dhifli, W. (2025). Learning Global-Local Multi-Scale Node Embeddings with Random Walks and Landmark-Guided Optimization. In Proceedings of the 34th ACM International Conference on Information and Knowledge Management (pp. 77-86).
  • Karabadji, N.E., Amara Korba, A., Assi, A., Seridi, H., Karabadji, M.A., Ghamri-Doudane, Y., Lakhdari, A., Elati, M. and Dhifli, W., 2025. A genetic and graph-guided feature learning strategy for improving decision tree construction. Cluster Computing, 28(7), p.478.
  • Ismail, M., Aananou, S., Foguem, C., Guinhouya, K. M., Dossou, G. T., Boudis, F., ... & Zitoun, D. (2025). A systematic computational analysis of pharmacological options in neuroinflammatory-induced autism spectrum disorder in children: A potential for drug repositioning. Journal of Biological Methods, 12(4), e99010079.
  • Yin, L., Traversa, P., Elati, M., Moreno, Y., Marek-Trzonkowska, N., & Battail, C. (2025). Sample-specific network analysis identifies gene co-expression patterns of immunotherapy response in clear cell renal cell carcinoma. Iscience, 28(8).
  • Lurant T, Garat A, Nemesien E, Nisse P, Azzouz R, Zitouni D. Study of micro-signals: proposed analysis methodology based on data from the Lille Poison Control and Toxicovigilance Center. Clin Toxicol (Phila). 2025 Jul;63(7):495-506.
  • Jannin, A., Pawlak, G., Aubert, S., Villenet, C., Figeac, M., Elati, M., ... & Coppin, L. (2025). Analyse transcriptomique des réseaux de régulation génique et des facteurs de transcription clés des tumeurs neuroendocrines pancréatiques. In Annales d'Endocrinologie (Vol. 86, No. 6, p. 101864). Elsevier Masson.
  • Nawale Hajjaji, Elnaz Sherafat, Djamel Zitouni, Benjamin Guinhouya. Machine learning-based sentiment analysis related to Trastuzumab Deruxtecan in online forums. In: Proceedings of the San Antonio Breast Cancer Symposium 2024: AACR; Clin Cancer Res 2025;31(12 Suppl).
  • Pawlak, G., & Elati, M. (2025). Lung. cregmap: A web application to explore lung cancer heterogeneity through its coregulation network. Journal of Thoracic Oncology, 20(3), S219.
  • Marcq G, Kool R, Dragomir A, Kulkarni GS, Breau RH, Kim M, Busca I, Abdi H, Dawidek M, Uy M, Fervaha G, Alimohamed N, Izawa J, Jeldres C, Rendon R, Shayegan B, Siemens R, Black PC, Cury FL, Kassouf W. Benefit of Whole-Pelvis Radiation for Patients With Muscle-Invasive Bladder Cancer: An Inverse Probability Treatment Weighted Analysis. J Clin Oncol. 2025 Jan 20;43(3):308-317.
  • Krajewski W, Nowak Ł, Łaszkiewicz J, Chorbińska J, Tomczak W, Gurwin A, Moschini M, Pradere B, Gallioli A, Subiela JD, Laukhtina E, Del Giudice F, Marcq G, Afferi L, Krajewska M, Khan MS, Nair R, Małkiewicz B, Szydełko T.  Impact of Histological Subtypes/Divergent Differentiation on Clinicopathological and Oncological Outcomes for Patients with Upper Tract Urothelial Carcinoma Treated with Radical Nephroureterectomy: A Comprehensive Updated Systematic Review and Meta-analysis. Eur Urol Oncol. 2025 Aug;8(4):1126-1139. 

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2024

  • Hadjadji, I., Karabadji, N. E., Seridi, H., Manaa, N., Elati, M., & Dhifli, W. (2024, December). Optimizing mlp network structure for classification problems using pso and dominating vertex set. In 2024 IEEE International Conference on Data Mining (ICDMW) (pp. 529-534). IEEE.
  • M. Messé, Ch. Bernhard, S. Foppolo, L. Thomas, P. Marchand, Ch. Herold-Mende, A. Idbaih, H. Kessler, N. Etienne-Selloum, Ch. Ochoa, U. Tambar, P. Laquerriere, N. Entz-Werle, S. Martin, M. Elati, D. Reita, and M. Dontenwill. Hypoxia-driven heterogeneous expression of 5 integrin in glioblastoma stem cells is linked to HIF-2α. Biochim Biophys Acta Mol Basis Dis. 2024 Aug 21;1870(8):167471.
  • Liu J, Wang X, Jiang W, Azoitei A, Eiseler T, Eckstein M, Hartmann A, Stilgenbauer S, Elati M, Hohwieler M, Kleger A, John A, Wezel F, Zengerling F, Bolenz C, Günes C. Impairment of α-tubulin and F-actin interactions of GJB3 induces aneuploidy in urothelial cells and promotes bladder cancer cell invasion. Cell Mol Biol Lett. 2024 Jul 2;29(1):94.
  • Andries, C., Ouddarour, I., Saint-Dizier, C., Guinhouya, B., & Lamer, A. (2024). Assessing Health Data Science Internships: A Comprehensive Study at the University of Lille. Studies in Health Technology and Informatics, 316, 1529-1533.
  • Halstuch D, Kool R, Marcq G, Breau RH, Black PC, Shayegan B, Kim M, Busca I, Abdi H, Dawidek MT, Uy M, Fervaha G, Cury FL, Alimohamed NS, Jeldres C, Rendon R, Brimo F, Siemens DR, Kulkarni GS, Kassouf W, Izawa JI. The Impact of Histologic Subtypes on Clinical Outcomes After Radiation-Based Therapy for Muscle-Invasive Bladder Cancer. J Urol. 2024 Nov;212(5):710-719.

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